FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439444
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30920.7036163879811762No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG17940.408243143608742No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14550.33110020844521715No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA11640.2648801667561737No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10440.23757293306997024No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC9520.21663738724388093No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8870.20184596899718737No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8330.1895577138383958No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7670.17453873531098388No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7300.16611900492440448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7180.1633882815557841No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.1435905371332866No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6240.14199761516825807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6130.13949445208035607No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5740.13061960113233995No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC5570.1267510763601278No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5510.12538571467581763No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5190.11810378569283003No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5020.11423526092061786No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5010.1140077006398995No Hit
GCACCGCCGGGCTCTCCGGCCCCACCGCCGC4950.11264233895558932No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4680.10649821137619356No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4470.10171944548110795No Hit

[OK]Adapter Content

Adapter graph