FastQCFastQC Report
Sun 21 May 2023
EGAF00007932058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42880.8597631641209283No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39340.788784582008333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18150.36391561167898434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16110.32301269995308196No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.29193450722016595No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10140.20331153181404413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9110.18265957148184833No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7900.15839853070324938No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6830.1369445524940751No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6210.12451327540090869No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6150.12331024858544097No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5370.10767089998436066No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5200.10426232400720212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)