FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418766
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25240.6027232392314562No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13900.3319276159000492No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10540.2516918756537064No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10080.24070722073902848No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8840.21109641183859243No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8130.1941418357746331No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8070.19270905469880553No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7220.17241132279124857No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.1296666873623933No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.12871149997850828No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5220.12465195359699689No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5090.12154759459937053No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4400.1050706122273537No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4270.10196625322972735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)