FastQCFastQC Report
Wed 31 May 2023
EGAF00007932062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34870.884130030755656No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14420.36561958828496016No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7500.19016275396235793No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7450.18889500226927552No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6110.15491925689466757No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5990.15187665283126986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5850.14832694809063918No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5240.13286037743503407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4950.1255074176151562No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4110.10420918917137213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)