FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393836
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9380.2381702028255416No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8820.22395108623894208No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8010.2033841497476107No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6580.1670746198925441No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6260.15894941041448726No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5650.1434607298469414No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5510.1399059507002915No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5500.13965203790410222No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5500.13965203790410222No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5400.13711290994220945No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5090.12924161326034186No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4940.12543292131750272No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT4920.12492509572512417No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4780.12137031657847429No Hit
CGCGGACAGAGTCACGCCAGACGCCGGAGCCCAGTTGCCCAGTG4780.12137031657847429No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4560.1157842350623102No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4460.11324510710041744No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4230.10740511278806407No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4180.10613554880711767No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4080.10359642084522491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)