FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393836
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13860.3519231355183376No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10400.2640693080368478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9200.23359977249413463No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8990.2282676037741598No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8770.2226815222579957No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7060.1792624341096294No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6560.16656679430016555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6460.1640276663382728No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6370.1617424511725693No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5450.1383824739231558No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5380.1366050843498309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5380.1366050843498309No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5320.13508160757269524No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5190.13178074122223463No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5130.130257264445099No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5070.1287337876679633No Hit
ACCGTTACCCCGCCAACTCAGACCGGTTGCG5030.1277181364832062No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4790.12162422937466358No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4590.11654597345087804No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4470.11349901989660671No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4350.1104520663423354No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4340.11019815354614611No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4280.10867467676901046No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4200.10664337439949623No Hit

[OK]Adapter Content

Adapter graph