FastQCFastQC Report
Wed 31 May 2023
EGAF00007932069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419210
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20220.48233582214164733No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA15000.35781589179647433No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14950.3566231721571527No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG13200.3148779847808974No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12800.30533622766632473No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9320.2223229407695427No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8910.21254263972710574No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8480.20228525082894014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8040.19178931800291024No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7870.18773407122921684No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7670.18296319267193054No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7640.18224756088833757No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7570.18057775339328738No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7490.17866940197037284No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6950.16578802986569977No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5890.14050237351208225No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5870.1400252856563536No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5750.13716275852198181No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5720.13644712673838888No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5560.13263042389255983No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5500.13119916032537393No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5420.1292908089024594No Hit
TTGACCTTCGACCTGCGCAGTAACGCCTTTACCCTCGATAGCCT5290.12618973784022328No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.12451993034517306No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4720.11259273395195725No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4700.11211564609622862No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4680.11163855824049998No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4600.10973020681758545No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4520.10782185539467094No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT4490.10710622361107798No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4260.10161971327019871No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4210.10042699363087713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)