FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419210
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33220.7924429283652584No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20820.49664845781350636No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17960.4284248944443119No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT16380.39073495384175No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA13140.3134467212137115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9560.2280479950382863No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9430.22494692397605018No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8700.2075332172419551No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.20347797046826174No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8360.19942272369456834No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8140.1941747572815534No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8130.19393621335368907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8020.1913122301471816No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7610.18153192910474464No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7490.17866940197037284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7230.17246725984590064No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7150.1705589084229861No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6960.1660265737935641No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.15720044846258438No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6410.1529066577610267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6050.1443190763579113No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG6030.14384198850218266No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5980.14264926886286108No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5920.1412180052956752No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5850.139548197800625No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5730.1366856706662532No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5500.13119916032537393No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5360.1278595453352735No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5040.12022613964361537No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4990.11903342000429379No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT4970.11855633214856516No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4900.11688652465351496No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4840.11545526108632904No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4740.11306982180768589No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4740.11306982180768589No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4530.10806039932253525No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4480.10686767968321367No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4470.10662913575534935No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4410.10519787218816344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)