FastQCFastQC Report
Wed 31 May 2023
EGAF00007932072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422250
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33750.7992895204262878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20340.4817051509769094No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18290.4331557134399052No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT16330.3867377146240379No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA12890.30526939017169924No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9530.2256956779159266No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9430.22332741267021908No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9190.217643576080521No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8770.20769686204854942No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8350.19775014801657786No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8290.19632918886915335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8010.18969804618117228No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7770.18401420959147424No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7690.18211959739490824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7640.18093546477205447No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7590.17975133214920072No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7340.1738306690349319No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6820.16151568975725283No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6800.16104203670811132No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6650.15748963883955003No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6570.15559502664298402No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6540.15488454706927174No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6540.15488454706927174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6220.1473060982830077No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG6110.14470100651272944No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5940.14067495559502663No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5460.12930728241563055No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5430.1285968028419183No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.12457075192421552No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5050.11959739490822972No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4970.1177027827116637No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4960.11746595618709295No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4830.11438721136767319No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT4800.11367673179396093No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4570.10822972172883363No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4550.10775606867969212No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4480.10609828300769686No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4460.10562462995855537No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4450.10538780343398461No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4410.1044404973357016No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4370.1034931912374186No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4370.1034931912374186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)