FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403029
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57251.420493314376881No Hit
ATGTCCAACATGGACATCGATGGTATTAACA18760.4654751891303107No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16790.41659533184956915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16020.39749000692257874No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14050.3486101496418372No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13490.33471536787675327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12590.31238446861143987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11790.29253478037560576No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11610.288068600522543No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11470.28459490508127205No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11280.27988060412526145No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11020.27342945544861536No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10660.26449709574249No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10560.26201588471301074No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9770.24241431758012452No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9470.2349706844916867No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9330.23149698905041574No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8870.2200834183148111No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8370.20767736316741475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8030.19924124566718526No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7940.19700815574065392No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7250.17988779963724694No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.1739328931664967No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7010.1739328931664967No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6930.17194792434291328No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.16872235000459024No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6720.1667373811810068No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6710.1664892600780589No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6690.16599301787216303No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6590.1635118068426838No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6190.1535869627247667No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6150.152594478312975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6060.15036138838644364No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5930.1471358140481206No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5890.1461433296363289No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5840.14490272412158925No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5810.1441583608127455No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.1416771497832662No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5640.13994030206263072No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5580.1384515754449432No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5170.1282786102240782No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5040.12505303588575511No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5030.12480491478280718No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4910.12182746154743207No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4800.11909812941500487No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4690.11636879728257768No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4520.11215073853246293No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4510.11190261742951499No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4410.10942140640003574No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4290.1064439531646606No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4220.10470710544402513No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4080.10123341000275415No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4040.10024092559096243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)