FastQCFastQC Report
Sun 21 May 2023
EGAF00007932076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412282
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17630.42761993004787985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12270.29761182879679443No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9480.229939701466472No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.20131851499701658No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8000.19404194216579915No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7830.1899185508947759No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7730.18749302661770342No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6690.16226757413614953No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6140.14892719061225082No Hit
TCCGCAAACCGTCGTCGTAAACGTCAGCGCG5290.1283102342571347No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4920.11933579443196647No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4870.11812303229343023No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4800.11642516529947948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)