FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences352535
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29680.8419022224743642No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11640.33017998212943395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9640.2734480264370914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.24735132681861374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7680.2178507098585956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7020.19912916448012255No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.15572921837548043No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5480.15544555859701875No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.14438282723701193No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4760.13502205454777538No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4630.13133447742777313No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4490.12736324052930914No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4460.126512261193924No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4430.12566128185853886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4200.11913710695391946No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4080.11573318961237891No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC3980.11289659182776178No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3690.10467045825237209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)