FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412075
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12290.2982466783959231No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10720.2601468179336286No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9260.2247163744463993No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7240.17569617181338348No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT6610.1604076927743736No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6460.15676757871746647No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.13929503124431233No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4980.12085178668931626No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4480.10871807316629255No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4150.10070982224109688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)