FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412075
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24650.5981920766850695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12460.30237214099375115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8320.2019049930231147No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8000.19413941636837953No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA7440.18054965722259297No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6860.16647454953588547No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6610.1604076927743736No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.14172177394891708No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5200.1261906206394467No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4610.11187283868227872No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4560.11065946732997634No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4500.1092034217072135No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4190.10168051932293877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)