FastQCFastQC Report
Wed 31 May 2023
EGAF00007932082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393244
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35990.9152078607683779No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24020.6108166939610014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11840.30108533124472336No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA7460.1897041022876382No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7200.1830924311623318No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6770.17215774430124808No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.1645288930028176No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5350.13604784815534376No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5060.12867329190019428No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4540.11544994964958143No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4520.1149413595630194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)