FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387144
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28370.7328022647903623No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10880.2810323807162193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9170.2368627694087988No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7610.19656768540904676No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7180.18546070712706383No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7020.18132787799888414No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6000.15498109230673857No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5640.14568222676833428No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5390.1392246812555535No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5110.13199223028123902No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4980.12863430661459302No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4210.10874506643522824No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4180.10797016097369454No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA3910.10099601181989129No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC3900.10073770999938009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)