FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365761
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32950.900861491520419No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28100.7682612416304636No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9700.26520049977991095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8820.24114107299575407No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7010.19165520654197687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6900.18864777819395726No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5970.16322133852433693No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5310.1451767684362193No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5060.13834170400890197No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4490.12275775711461856No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4320.1181099133040428No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4280.11701630299567203No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4100.11209505660800358No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3800.10389297929522284No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3730.101979161255574No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC3720.1017057586784813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)