FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406897
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38230.9395498123603762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36620.8999820593417991No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.30007594059430276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10400.25559293875354205No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.22782178290820526No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9200.22610144582044106No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9060.2226607716449126No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8390.20619468809059788No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8110.199313339739541No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7310.17965234445080697No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6980.1715421838942042No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6700.16466083554314728No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6660.16367778577871056No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6630.16294049845538305No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6190.15212695104657936No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5910.14524560269552245No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.1449998402544133No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5620.13811849190335637No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5190.12755070693566184No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.1258303698478976No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5030.12361850787791503No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4780.11747444685018568No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4450.1093642862935829No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4430.10887276141136454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4420.10862699897025538No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4100.10076260085476177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)