FastQCFastQC Report
Wed 31 May 2023
EGAF00007932092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435055
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAACGTCCGGTGTACCCGAAACCGGTTC39080.8982772293158336No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36660.8426520784728367No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31070.7141625771454184No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19470.44752962269138385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16650.3827102320396272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14030.3224879612922504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11800.27123007435841445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11230.25812828263093174No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10790.24801461884129591No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10570.24295778694647802No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10040.2307754191998713No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9770.2245693073289584No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9000.20687039569709575No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8360.19215961200308007No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7640.1756099803473124No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7570.17400098838077943No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7270.16710530852420957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6950.15974991667720173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6950.15974991667720173No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6500.14940639689234694No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6330.145498844973624No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6280.14434956499752905No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA6210.14274057303099608No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6040.13883302111227316No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5740.1319373412557033No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5700.1310179172748273No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5500.1264207973704474No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.1259610853800094No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5470.12573122938479042No Hit
GGTCGCCGTGTGCTGGTTGACGTCGAACGTG5290.12159382147084852No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5230.12021468549953454No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.11998482950431553No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5090.1169967015664686No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5080.11676684557124961No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5010.11515785360471664No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4900.1126294376573077No Hit
TCTAAAGGTGAAATCGTTCGTACCGATACTG4750.10918159772902276No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4670.1073427497672708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)