FastQCFastQC Report
Wed 31 May 2023
EGAF00007932096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411570
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24290.5901790703889982No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12950.3146487839249702No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12070.2932672449401074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.2539057754452463No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7570.1839298296766042No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7540.18320091357484752No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7080.17202420001457833No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6860.16667881526836262No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6460.15695993391160679No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6210.15088563306363437No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6040.14675510848701315No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5840.14189566780863525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5340.12974706611269043No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.1195422406880968No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4190.1018052822120174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)