FastQCFastQC Report
Sun 21 May 2023
EGAF00007932097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395685
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG25230.6376284165434626No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22640.5721723087809748No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16930.4278656001617448No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15910.4020875191124253No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG14410.36417857639283774No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13860.35027863072898896No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13070.3303132542300062No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA11960.3022606366175114No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11830.2989751949151471No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT11440.28911886980805435No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11340.28659160696008185No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11000.27799891327697535No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT10890.2752189241442056No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8920.22543184603914732No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG8640.2183555100648243No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8570.21658642607124357No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8080.20420283811617826No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7960.20117012269861126No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7550.190808345021924No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7300.18449018790199276No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7210.1822156513388175No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5850.14784487660639145No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5770.14582306632801345No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5500.13899945663848767No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5430.13723037264490695No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5340.13495583608173167No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5210.13167039437936742No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG5010.12661586868342242No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4700.11878135385470766No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4680.11827590128511316No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4580.11574863843714066No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4310.1089250287476149No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4250.10740867103883138No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4160.10513413447565613No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT4080.10311232419727813No Hit
AGCGCCGTCCGGGTTCTGGTTCAGATCATCCATAATAACGACGC3980.10058506134930563No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT3960.10007960877971113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)