FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399408
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG25490.6381945279012939No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22850.5720967031206184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17500.4381484597203862No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17080.4276328966870969No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG14360.35953210751912834No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13950.3492669150342507No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12850.3217261547089693No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA12150.30420021632015387No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT11820.29593798822256945No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11560.2894283539638665No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11330.2836698313503986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10920.27340463886552097No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10590.26514241076793654No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9270.23209349837759885No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8810.220576453150663No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG8790.2200757120538397No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8580.21481793053719506No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8100.2028001442134359No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7990.20004606818090775No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7740.19378680447061652No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6280.15723270440251574No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5860.14671714136922648No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5510.13795417217481873No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5320.1331971317549974No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5240.1311941673677042No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5220.1306934262708809No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5180.1296919440772343No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4860.12168008652806153No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4850.12142971597964988No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4710.1179245283018868No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG4700.11767415775347514No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4660.11667267555982855No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4560.11416897007571206No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4470.11191563514000721No Hit
AGCGCCGTCCGGGTTCTGGTTCAGATCATCCATAATAACGACGC4340.10866081801065577No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4250.10640748307495093No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4140.10365340704242279No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT4050.10140007210671795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)