FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399408
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38320.9594199415134399No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35950.900082121539879No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC27790.6957797540359733No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG25810.6462063854504667No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG23570.5901233826062573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17800.44565957617273566No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC17180.4301366021712134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15410.3858210151023515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13930.3487661739374274No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12850.3217261547089693No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT12010.3006950286423908No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11910.2981913231582743No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC10930.2736550094139326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10810.2706505628329928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9630.24110683812041822No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9620.24085646757200657No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC9090.22758682850618916No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7700.19278532227696993No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7350.1840223530825622No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6130.153477146176341No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6120.15322677562792936No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6110.1529764050795177No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5740.14371269478828666No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5540.13870528382005368No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5530.13845491327164203No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.13244602010976245No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5030.12593638585105957No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4940.12368305091535473No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4910.12293193927011978No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4870.12193045707647318No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4860.12168008652806153No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4860.12168008652806153No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.12092897488282658No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4670.1169230461082402No Hit
GGTACCGGTAAATCCGTGGCGACCAACCTGA4440.11116452349477227No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4370.10941192965589072No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA4190.10490525978448104No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4150.10390377759083444No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4150.10390377759083444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)