FastQCFastQC Report
Sun 21 May 2023
EGAF00007932104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295548
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20850.7054691623695643No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16580.5609917847523922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8110.27440551111832934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6800.2300810697416325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6030.20402777213853587No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5970.2019976450525803No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5940.20098258150960252No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4900.16579371201970577No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4880.16511700299105392No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4750.1607183943048168No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4600.15564307658992785No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4500.15225953144666857No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4410.14921434081773519No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4260.14413902310284624No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4210.14244725053121657No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3930.13297332413009055No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3770.12755965190087568No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT3750.1268829428722238No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT3220.1089501536129495No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC3170.10725838104131985No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3150.106581672012668No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG3100.10488989944103834No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG3050.10319812686940869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)