FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences296946
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21320.717975658874004No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17750.5977517797848767No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8070.2717665838233214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7510.2529079361230661No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6350.21384359445825166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6150.20710836313673192No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5850.1970055161544523No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5150.17343220652913324No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.17141163713267732No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4760.16029850545216975No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4660.1569308897914099No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4420.1488486122055862No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4350.14649128124305427No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4320.14548099654482632No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4210.1417766193179905No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4020.1353781495625467No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3980.13403110329824278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3980.13403110329824278No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT3490.11752978656051942No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3240.10911074740861974No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG3010.10136523138887205No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG2980.10035494669064408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)