FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380044
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50871.3385292229320815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33350.8775299702139753No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19730.5191504141625707No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12930.3402237635642189No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.26207491764111523No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9060.2383934491795687No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8860.23313090063255834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8330.21918514698298092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8130.21392259843597056No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7800.20523939333340352No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6910.18182105229920745No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6870.18076854258980538No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6180.1626127501026197No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5610.14761448674364022No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4540.11945985201713485No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4390.1155129406068771No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4360.11472355832482554No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4320.11367104861542347No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4270.1123554114786709No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4180.10998726463251625No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG3930.1034090789487533No Hit

[OK]Adapter Content

Adapter graph