FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398017
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18570.46656298600311047No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14620.3673209938268968No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13480.33867900114819216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12750.3203380760118286No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10080.2532555142117045No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9210.2313971513779562No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9090.2283822047801978No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5850.14697864664072136No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4770.1198441272608959No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4720.1185878995118299No Hit
ACCTTCCAGCGCGTTACGTGCGGCAATACGGTCGCGCTGTTTTT4250.10677935867060954No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4240.10652811312079635No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4160.10451814872229075No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4120.10351316652303796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)