FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398017
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32520.8170505279925229No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20560.516560850415937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18600.46731672265255003No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13490.33893024669800537No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10700.2688327383001229No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8420.2115487529427135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7630.19170035450747078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7180.18039430476587684No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5450.13692882464819342No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5100.12813523040473146No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5100.12813523040473146No Hit
GTAGACAAATCTACCGGTAAGCAGAACAAAA4910.12336156495828068No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4670.11733167176276389No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4120.10351316652303796No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4010.10074946547509278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)