FastQCFastQC Report
Sun 21 May 2023
EGAF00007932116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379028
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34790.9178741412243949No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30640.8083835495003009No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19090.5036567219308336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17980.47437128655402766No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12690.3348037611997003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9480.25011344808299124No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8380.2210918454573277No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7100.18732125331110103No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5080.13402703758033707No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5020.13244404107348268No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4840.12769505155291958No Hit
GTAGACAAATCTACCGGTAAGCAGAACAAAA4590.12109923277435967No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4450.11740557425836615No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4410.11635024325379656No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3960.10447776945238874No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3930.10368627119896157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)