FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476139
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65601.3777489346598366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25410.5336676894772325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12350.2593780387659906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11150.2341753143514814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9970.20939263534388067No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9310.19553113691590063No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8930.18755027418463935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7000.14701589241797036No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5140.10795166957548112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)