FastQCFastQC Report
Sun 21 May 2023
EGAF00007932132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483755
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31110.6430941282260649No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11150.23048857376151152No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11020.22780126303604095No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10680.22077291190788725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10510.2172587363438104No Hit
CGTGCCTCTGCTAAACTGCAACGCGAAGCGC9350.19327965602422714No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9180.18976548046015027No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8950.18501100763816394No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8270.17095430538185652No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7860.16247894078614172No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7070.14614836022366692No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6770.13994687393411956No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6690.13829314425690692No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6670.13787971183760375No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6030.12464987441990263No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5530.11431406393732364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)