FastQCFastQC Report
Wed 31 May 2023
EGAF00007932133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449968
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9690.21534864701489884No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9440.2097926963695196No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8860.1969028908722398No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7670.17045656580023466No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7610.16912313764534367No Hit
GTACTCCGGTTTGGTCAGCTGCATGGTAATCGCTTCACGCTGCA7590.16867866159371334No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6840.15201080965757566No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6560.14578814493475092No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6510.14467695480567508No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5730.12734238879209187No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5260.11689720157877893No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5110.1135636311915514No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5080.11289691711410589No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4590.1020072538491626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)