FastQCFastQC Report
Sun 21 May 2023
EGAF00007932135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452729
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21810.4817451499683033No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16530.3651190889030745No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12070.2666054085335819No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11650.25732833549430234No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11390.25158538551760545No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9830.21712768565742419No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8270.18266998579724295No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8020.1771479185119575No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7540.1665455493242094No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7380.1630114262616267No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7210.1592564205076326No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7160.15815200705057553No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6900.15240905707387864No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6900.15240905707387864No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6540.14445728018306758No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6180.1365055032922565No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6020.13297138022967384No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5790.1278910783272112No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5750.12700754756156551No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5600.12369430719039426No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5570.12303165911615999No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5230.11552164760817178No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5190.1146381168425261No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5170.11419635145970328No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5070.11198752454558908No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5010.11066222839712057No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4810.1062445745688922No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4750.10491927842042369No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4650.1027104515063095No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4620.10204780343207526No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4540.10028074190078391No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4530.10005985920937249No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)