FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456319
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21590.4731339260473484No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16560.362904021090509No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12640.27699920450386684No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11730.2570570149391106No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10640.2331702164494575No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9420.2064345337362678No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9110.1996410405878344No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8420.1845200397090632No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8110.17772654656062972No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7930.1737819376357329No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7800.1709330534121963No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7730.16939903883029195No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7400.16216725580131444No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7160.1569077772347853No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6770.1483611245641755No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6070.13302097874513225No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5940.13017209452159564No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5940.13017209452159564No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5930.12995294958132358No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5800.127104065357787No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5530.12118715197044173No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5170.11329793412064805No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5170.11329793412064805No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5100.11176391953874373No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5080.11132562965819963No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4960.10869589037493509No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4900.1073810207333028No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4860.10650444097221462No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4840.10606615109167053No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4760.10431299156949414No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4680.10255983204731776No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4630.10146410734595754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)