FastQCFastQC Report
Sun 21 May 2023
EGAF00007932143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477131
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12610.264288004761795No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10800.22635293032731052No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10700.2242570698613169No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9740.20413680938777817No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8740.18317820472784205No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8690.18213027449484523No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8320.17437559077066886No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7170.15027319541174228No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6820.14293768378076463No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6210.13015293493820354No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5250.11003267446466483No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5220.10940391632486676No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5040.10563136748607824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)