FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494191
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19140.38729964730235883No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16420.33226019899188775No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12320.24929632470036886No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG11320.2290612334097545No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10320.20882614211914016No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9160.18535343622202752No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8720.1764499960541572No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6640.13436100616967933No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6120.12383875869855987No Hit
TTCGGTGGCCAGCCACGGGCGCCATGGGGTCGGAGAGCCCGGGT6040.12221995139531072No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5620.1137212130532527No Hit
AGACGCTTTGTCGTTGCGCCAGCCTGCACCGGTCCACAGCTGCA5120.10360366740794552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)