FastQCFastQC Report
Sun 21 May 2023
EGAF00007932147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462171
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28090.6077836991070406No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23130.5004641139318564No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT19290.41737798347364935No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19100.4132669509770193No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18350.3970391911219008No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16680.36090537917783677No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14340.3102747684298669No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12830.2776028785882282No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11710.2533694238712511No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11530.24947476150602266No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10750.23259789125669936No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10180.22026479376680927No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9520.2059843650943049No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9160.198195040363848No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8930.19321852734161166No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8570.18542920261115475No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8210.17763987788069782No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8190.17720713761789467No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8080.17482706617247729No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA7540.1631430790767919No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6210.13436585160038167No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6160.13328400094337378No Hit
CAGTGCGCTCAGTACTTGAGTGGTCTGCGCAGCAGCCTGGAACA5930.12830748792113741No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5720.12376371516170423No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5420.1172726112196568No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5290.11445979951143624No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5260.11381068911723151No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5080.10991602675200304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)