FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462171
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65761.4228499840967954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30040.6499758747303487No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29710.6428356603940966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29130.6302861927728048No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG19770.4277637497809252No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19550.4230036068900904No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19310.4178107237364525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18810.40699221716637346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18270.39530823007068816No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13820.29902352159698464No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13410.29015234620951985No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12370.26764985254375545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11040.2388726250673452No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10590.2291359691542741No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9850.2131245794305571No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9330.2018733325976749No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9120.19732955983824169No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8380.18131817011452472No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7960.1722306245956583No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7870.17028329341304407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7690.16638863104781562No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7620.16487404012800458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7050.15254094263811446No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6760.1462662088274686No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6590.14258791659364176No Hit
GCGGCAGCCGTTACCCAGGCACTGGGCAACG5990.1296057087095469No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.12809111778973584No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5630.12181638397909No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5380.11640713069405047No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4640.10039574097033348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)