FastQCFastQC Report
Sun 21 May 2023
EGAF00007932149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501360
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30430.6069490984522099No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26960.5377373543960428No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20680.41247805967767676No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20420.40729216531035584No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT20310.4050981330780278No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19300.38495292803574277No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14610.29140737194830063No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14460.28841550981330777No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12990.25909526089037815No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12820.255704483804053No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11490.22917663954044998No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10810.2156135311951492No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10380.2070368597415031No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9870.1968645284825275No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9860.19666507100686131No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9540.19028243178554333No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9000.17951172809956917No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8970.1789133556725706No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8860.17671932344024255No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA8200.16355513004627414No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6830.13622945588000637No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6610.13184139141535026No Hit
CAGTGCGCTCAGTACTTGAGTGGTCTGCGCAGCAGCCTGGAACA6480.1292484442316898No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6360.12685495452369555No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6210.12386309238870273No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5770.11508696345939047No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5470.10910323918940483No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5200.10371788734641774No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5120.10212222754108825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)