FastQCFastQC Report
Sun 21 May 2023
EGAF00007932150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501360
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34610.6903223232806766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32110.6404579543641296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31300.6243018988351684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29900.5963778522419021No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21600.430828147438966No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21160.42205201850965374No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG21070.42025690122865805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20980.41846178394766237No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20710.41307643210467526No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15620.31155257699058564No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15130.3017791606829424No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13310.2654779001116962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11930.23795276846976227No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11490.22917663954044998No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11230.2239907451731291No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10120.20185096537418223No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10100.20145205042284986No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9580.19108026168820808No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8940.17831498324557205No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8580.17113451412158925No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8400.1675442795595979No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA8140.162358385192277No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7680.15318334131163236No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7550.15059039412797193No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7430.14819690441997765No Hit
GCGGCAGCCGTTACCCAGGCACTGGGCAACG6520.13004627413435457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6200.12366363491303654No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6000.11967448539971279No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5720.11408967608105952No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.10052656773575873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)