FastQCFastQC Report
Wed 31 May 2023
EGAF00007932155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470869
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG22800.4842111075479592No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22210.47168108327369185No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG22030.4678583640035764No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16770.356150011999091No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG16590.35232729272897556No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16040.340646761625845No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15830.33618692247737697No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15600.3313023367433405No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15550.33024047027941955No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12890.2737491743988243No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12730.27035120171427723No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10670.22660230340073353No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10250.21768262510379743No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10210.21683313193266068No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9740.20685158717180363No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8680.18434001813667922No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8560.18179153862326888No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8410.178605939231506No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7700.16352743544382833No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7590.1611913292232022No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7550.16034183605206545No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7300.15503250373246064No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG7290.15482013043967643No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6720.14271485275097745No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6610.14037874653035132No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT6590.13995399994478294No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6530.1386797601880778No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6530.1386797601880778No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6260.1329456812829046No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6220.13209618811176782No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6180.13124669494063104No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT6060.12869821542722074No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5960.1265744824993788No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5770.12253938993647914No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5640.11977853713028463No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5510.11701768432409014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5480.11638056444573756No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5340.11340733834675887No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5170.10979699236942758No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5130.10894749919829082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)