FastQCFastQC Report
Wed 31 May 2023
EGAF00007932156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470869
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35570.7554118024333731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28180.5984679390658548No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25740.5466488556265119No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG24010.5099082759748466No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23390.49674113182222657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22550.4789017752283544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG22380.4752914292510231No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20430.4338786371581056No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18650.3960761910425193No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17240.3661315567599481No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16220.34446948089596047No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG15660.3325765765000457No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14940.3172856994195838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13820.2934998906277542No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11230.23849520779664832No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10340.21959398473885516No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10100.21449702571203455No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9090.1930473231408311No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9070.19262257655526271No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8200.17414610008303796No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7960.16904914105621732No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7600.1614037025159864No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7460.1584304764170077No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC7280.15460775714689223No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6740.14313959933654583No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6730.14292722604376165No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6610.14037874653035132No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6510.13825501360250939No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC6470.13740552043137264No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6230.132308561404552No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6060.12869821542722074No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5670.12041565700863723No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5640.11977853713028463No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5620.11935379054471625No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5580.1185042973735795No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5440.1155310712746008No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5340.11340733834675887No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5160.10958461907664341No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4930.10470003334260697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)