FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473086
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35920.7592699847385042No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28860.6100370757113929No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25100.5305589258612599No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG24740.5229493157692259No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22810.4821533505535991No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG22200.4692592890087637No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22010.4652431059046347No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG21450.45340593465035955No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18540.3918949197397513No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17420.3682205772312011No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16510.348985173943004No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC15520.3280587461899105No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG15380.3250994533763417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13810.29191309825274897No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11450.24202787653830382No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10230.216239753448633No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10090.21328046063506423No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9290.19637021598609977No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9010.1904516303589622No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8500.17967134939524737No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8140.1720617393032134No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC7910.1672000439666361No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7520.15895629970026592No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7300.15430598242180069No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7220.15261495795690425No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7200.15219220184068014No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6940.14669637232976668No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6320.13359093272681924No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6210.1312657740875866No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6130.12957474962269017No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC6120.1293633715645781No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5680.12006273700764765No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5630.11900584671708737No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.11710344419407887No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5490.11604655390351859No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5470.11562379778729448No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5090.10759143157903638No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5020.10611178517225199No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4980.10526627293980376No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4860.1027297362424591No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)