FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480096
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21570.4492851429714057No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19620.40866826634673065No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16230.3380573885222955No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15790.32889255482236884No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15410.3209774711724322No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14950.31139605412250887No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14250.29681563687262547No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13030.27140405252282873No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12290.2559904685729521No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11250.23432813437312536No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10420.21703992534826366No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10190.212249216823302No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9270.1930863827234553No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8630.17975571552356195No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8410.1751732986735986No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8040.16746650669866028No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7620.15871825634873024No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7560.15746850629874026No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7560.15746850629874026No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6910.14392954742384856No Hit
GATAATACGGCCAGCCGGAGAGCGGGTTTCGGTGCCATCGGTAG6520.13580617209891355No Hit
CAGGCGGGAGATCTGAGAGCTCAGGGTGTTGTTGACGCGTTGCA6420.13372325534893023No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6120.1274745050989802No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5980.12455842164900355No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5880.1224755048990202No Hit
GACGGAAGACTGGGTCTGGTCAGAAGAAGTCAGGTTTACCGGCG5790.1206008798240352No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5750.11976771312404186No Hit
GTGACCACGGAAGACCAGCGGTTCGCCGGATTCGGTAGTCCAGT5740.11955942144904352No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5530.11518529627407852No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5490.11435212957408519No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5020.10456242084916349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)