FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449490
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19940.443613873501079No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17720.3942245656188124No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15060.3350463859040246No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15010.3339340141048744No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14850.33037442434759395No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13480.2998954370508799No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13030.28988409085852856No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11660.2594051035618145No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11220.2496162317292932No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10570.23515539834034127No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9540.21224053927784825No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9320.20734610336158757No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8140.18109412890164409No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7990.17775701350419365No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7970.17731206478453357No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7450.16574339807337204No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7170.1595141159981312No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6940.15439720572204052No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6780.15083761596476006No Hit
GATAATACGGCCAGCCGGAGAGCGGGTTTCGGTGCCATCGGTAG6570.14616565440832946No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6260.13926894925359853No Hit
CAGGCGGGAGATCTGAGAGCTCAGGGTGTTGTTGACGCGTTGCA5790.12881265434158712No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5640.12547553894413668No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5640.12547553894413668No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5630.12525306458430666No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5460.12147100046719615No Hit
GACGGAAGACTGGGTCTGGTCAGAAGAAGTCAGGTTTACCGGCG5450.12124852610736613No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5410.12035862866804602No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5130.11412934659280519No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5120.11390687223297516No Hit
GTGACCACGGAAGACCAGCGGTTCGCCGGATTCGGTAGTCCAGT5110.11368439787314512No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4530.1007808850030034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)