FastQCFastQC Report
Wed 31 May 2023
EGAF00007932162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449490
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67191.4948052236979688No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32100.714142695054395No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25570.5688669380853857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24620.5477318739015328No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18470.4109101426060646No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16930.3766490911922401No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16160.35951856548532785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15180.33771607822198496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11650.2591826292019845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10940.24338694965405236No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10290.22892611626510045No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10230.22759127010612026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10080.22425415470866983No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9220.2051213597632873No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8700.19355269305212575No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7520.16730071859218223No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7490.16663329551269215No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7330.1630737057554117No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7100.157956795479321No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6940.15439720572204052No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6410.14260606465104897No Hit
GGTGCAAAAGTTGTGCGTGTTCGCCGTCTGA6300.14015884669291864No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6270.13949142361342853No Hit
GAGATGGTTACCGATCAGGCATTCGAAGACC6150.1368217312954682No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6140.13659925693563815No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6100.13570935949631804No Hit
GTGGTTGAAGGCCAGGAATACTCCTTCCGTG5730.12747780818260696No Hit
ATGAACGGCCAGCGTTATCGCGAAACCCCGC5690.12658791074328682No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5370.11946873122872588No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4940.10990233375603461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)