FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466454
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63801.3677661677250061No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32450.6956741715153049No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22390.4800044591749669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12510.26819364824827313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12350.26476351365836714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10570.22660326634566325No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9860.2113820441029555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9780.2096669768080025No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7630.16357454325614101No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7320.15692865748819818No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7290.15628550725259083No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7070.15156907219147012No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6220.13334648218259465No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5560.11919717699923252No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.11169375758381318No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5050.10826362299390722No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4980.10676293911082335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)