FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512222
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16620.32446868740507046No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14500.28308038311513367No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13780.2690239778845891No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13340.260433952465923No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11700.22841658499634923No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11170.21806950892386506No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8910.17394801472798904No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8380.16360093865550485No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8230.16067252089914139No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7430.145054292865203No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7400.1444686093139303No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6560.12806946987829496No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6180.12065081156217422No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5770.11264646969478079No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5490.10718008988290233No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5350.10444689997696312No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5270.10288507717356928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)