FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512222
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37130.7248810086251665No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32210.6288289062164453No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25410.49607396792796876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.27097625638883144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13680.2670716993803468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11850.23134500275271266No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11310.22080269882980424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10690.20869857210350198No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9240.18039053379198863No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8450.16496753360847444No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7710.1505206726770814No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7650.14934930557453605No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6750.13177879903635534No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6210.1212364951134469No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5550.10835145698544772No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC5550.10835145698544772No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5500.10737531773332656No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5160.10073757081890274No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5150.1005423429684785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)