FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493206
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30240.6131312271140253No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19090.38705936261927065No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18970.384626302194215No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16750.33961468433068537No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15670.31771714050518446No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14040.28466806973151176No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11880.24087298208050997No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11080.22465257924680562No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10760.21816441811332385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10490.2126900321569486No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9790.19849717967745728No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9160.1857236124459151No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.16159576323077984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7830.15875719273488156No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7690.1559186222389833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7640.1549048470618768No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7350.14902495103465896No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6660.13503485359058892No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6530.13239903813011195No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5950.12063924607567629No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5740.1163813903318289No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5650.11455659501303714No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5620.11394832990677323No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5440.11029873926918976No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5030.10198578281691627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)